包立随 教授 博士生导师
中国海洋大学“青年英才工程”第一层次教授
E-mail: baolisui@ouc.edu.cn
Tel：0532-85906585
教育背景：
2005年9月-2009年6月，中国海洋大学，生物技术，本科；
2005年9月-2009年6月，中国海洋大学，计算机科学与技术，本科；
2011年9月-2017年8月，美国奥本大学，水生生物基因组学，博士；
科研工作经历：
2017年9月-2020年12月，美国芝加哥大学Ben May癌症研究中心，博士后；
2021年7月-2023年8月，中国海洋大学，海洋生物多样性与进化研究所，副教授；
2023年9月-至今，中国海洋大学，海洋生物多样性与进化研究所，教授。
研究方向和研究成果：
主要研究方向为围绕重要水生生物，开发复杂基因组组装与扫描的新技术，解析水生生物的性染色体演化、性别决定等适应性机制。主要论文以第一或通讯作者发表在Nature Cancer, Nature Ecology & Evolution, Nature Communications, Cell Discovery等国际高水平期刊上。
Prof. Lisui Bao
Education:
2005.09-2009.06 B.A. in Biotechnology, Ocean University of China, China.
2005.09-2009.06 B.A. in Computer Science and Technology, Ocean University of China, China.
2011.09-2017.08 Ph.D. in Aquaculture Genomics, Auburn University, USA.
Academic appointments：
2017.9-2020.12 Postdoctoral scholar in The Ben May Department for Cancer Research of The University of Chicago, USA.
2021.7-2023.9 Associate professor of Ocean University of China.
Research focus:
We develop new computational methods to integrate the large scale genomic, transcriptomic, and epigenetic data to understand the mechanisms of evolutionary adaptation, sex determination and chromosomal rearrangement.
Publications:
* 代表共同第一作者
# 代表共同通讯作者
1. Bao Lisui, Zhong Xiaoming, Yang Yang, Yang Lixing*. Starfish infers signatures of complex genomic rearrangements across human cancers. Nature Cancer (2022) 10.1038/s43018-022-00404-y
2. Han Wentao#, Liu Liangjie#, Wang Jing#, Wei Huilan#, Li Yuli#, Zhang Lijing#, Guo Zhenyi, Li Yajuan, Liu Tian, Zeng Qifan, Xing Qiang, Shu Ya, Wang Tong, Yang Yaxin, Zhang Meiwei, Li Ruojiao, Yu Jiachen, Pu Zhongqi, Lv Jia, Lian Shanshan, Hu Jingjie, Hu Xiaoli, Bao Zhenmin, Bao Lisui*, Zhang Lingling*, Wang Shi*. Ancient homomorphy of molluscan sex chromosomes sustained by reversible sex-biased genes and sex determiner translocation. Nature Ecology & Evolution (2022) 10.1038/s41559-022-01898-6
3. Bao Lisui, Tian Changxu, Liu Shikai, Zhang Yu, Elaswad Ahmed, Yuan Zihao, Khalil Karim, Sun Fanyue, Yang Yujia, Zhou Tao, Li Ning, Tan Suxu, Zeng Qifan, Liu Yang, Li Yueru, Li Yun, Gao Dongya, Dunham Rex, Davis Kenneth, Waldbieser Geoffrey, Liu Zhanjiang*. The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish. BMC Biology (2019) 17(1):6
4. Wang Hao#, Lv Jia#, Zeng Qifan*, Liu Yaran, Xing Qiang, Wang Shi, Hu Jingjie, Bao Lisui*. Genetic differentiation and selection signatures in two bay scallop (Argopecten irradians) breeds revealed by whole-genome resequencing analysis. Aquaculture (2021) 543:736944（期刊论文）
5. Zeng Qifan#, Liu Jing#, Wang Chunde#, Wang Hao, Zhang Lingling, Hu Jingjie, Bao Lisui*, Wang Shi*. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal (2021) 19:4954-4960
6. Dai Xiaoting#, Zhu Xuan#, Bao Lisui#, Chen Xiaomei, Miao Yan, Li Yangping, Li Yuli, Lv Jia, Zhang Lingling, Huang Xiaoting, Bao Zhenmin, Wang Shi*, Wang Jing*. Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot. Computational and Structural Biotechnology Journal (2022) 20:2713-2722
7. He Yan#, Chang Yue#, Bao Lisui#, Yu Mengjun#, Li Rui#, Niu Jingjing, Fan Guangyi, Song Weihao, Seim Inge, Qin Yating, Li Xuemei, Liu Jinxiang, Kong Xiangfu, Peng Meiting, Sun Minmin, Wang Mengya, Qu Jiangbo, Wang Xuangang, Liu Xiaobing, Wu Xiaolong, Zhao Xi, Wang Xuliang, Zhang Yaolei, Guo Jiao, Liu Yang, Liu Kaiqiang, Wang Yilin, Zhang He, Liu Longqi, Wang Mingyue, Yu Haiyang, Wang Xubo, Cheng Jie, Wang Zhigang, Xu Xun, Wang Jian, Yang Huanming, Lee Simon Ming-Yuen, Liu Xin*, Zhang Quanqi*, Qi Jie*. A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth. Molecular Ecology Resources (2019) 19(5):1309-1321
8. Li Yuli#, Wang Ruijia#, Xun Xiaogang#, Wang Jing#, Bao Lisui#, Thimmappa Ramesha#, Ding Jun#, Jiang Jingwei#, Zhang Liheng, Li Tianqi, Lv Jia, Mu Chuang, Hu Xiaoli, Zhang Lingling, Liu Jing, Li Yuqiang, Yao Lijie, Jiao Wenqian, Wang Yangfan, Lian Shanshan, Zhao Zelong, Zhan Yaoyao, Huang Xiaoting, Liao Huan, Wang Jia, Sun Hongzhen, Mi Xue, Xia Yu, Xing Qiang, Lu Wei, Osbourn Anne, Zhou Zunchun*, Chang Yaqing*, Bao Zhenmin*, Wang Shi*. Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation. Cell Discovery (2018) 4:29
9. Liu Zhanjiang#*, Liu Shikai#, Yao Jun#, Bao Lisui#, Zhang Jiaren#, Li Yun#, Jiang Chen, Sun Luyang, Wang Ruijia, Zhang Yu, Zhou Tao, Zeng Qifan, Fu Qiang, Gao Sen, Li Ning, Koren Sergey, Jiang Yanliang, Zimin Aleksey, Xu Peng, Phillippy Adam M., Geng Xin, Song Lin, Sun Fanyue, Li Chao, Wang Xiaozhu, Chen Ailu, Jin Yulin, Yuan Zihao, Yang Yujia, Tan Suxu, Peatman Eric, Lu Jianguo, Qin Zhenkui, Dunham Rex, Li Zhaoxia, Sonstegard Tad, Feng Jianbin, Danzmann Roy G., Schroeder Steven, Scheffler Brian, Duke Mary V., Ballard Linda, Kucuktas Huseyin, Kaltenboeck Ludmilla, Liu Haixia, Armbruster Jonathan, Xie Yangjie, Kirby Mona L., Tian Yi, Flanagan Mary Elizabeth, Mu Weijie, Waldbieser Geoffrey C. The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts. Nature Communications (2016) 7:11757
10. Wang Ruijia#, Sun Luyang#, Bao Lisui#, Zhang Jiaren, Jiang Yanliang, Yao Jun, Song Lin, Feng Jianbin, Liu Shikai, Liu Zhanjiang*. Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish. BMC Genomics (2013) 14:929